arXiv:2509.25205v1 Announce Type: new
Abstract: Self-supervised learning (SSL) has emerged as a powerful paradigm for learning representations on graph data without requiring manual labels. However, leading SSL methods like GRACE are fundamentally incompatible with privacy-preserving technologies such as Homomorphic Encryption (HE) due to their reliance on non-polynomial operations. This paper introduces Poly-GRACE, a novel framework for HE-compatible self-supervised learning on graphs. Our approach consists of a fully polynomial-friendly Graph Convolutional Network (GCN) encoder and a novel, polynomial-based contrastive loss function. Through experiments on three benchmark datasets — Cora, CiteSeer, and PubMed — we demonstrate that Poly-GRACE not only enables private pre-training but also achieves performance that is highly competitive with, and in the case of CiteSeer, superior to the standard non-private baseline. Our work represents a significant step towards practical and high-performance privacy-preserving graph representation learning.