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Benchmarking for Domain-Specific LLMs: A Case Study on Academia and Beyond

arXiv:2508.07353v3 Announce Type: replace-cross Abstract: The increasing demand for domain-specific evaluation of large language models (LLMs) has led to the development of numerous benchmarks. These efforts often adhere to the principle of data scaling, relying on large corpora or extensive question-answer (QA) sets to ensure broad coverage. However, the impact of corpus and QA set design on the precision and recall of domain-specific LLM performance remains poorly understood. In this paper, we argue that data scaling is not always the optimal principle for domain-specific benchmark construction. Instead, we introduce Comp-Comp, an iterative benchmarking framework grounded in the principle of comprehensiveness and compactness. Comprehensiveness ensures semantic recall by covering the full breadth of the domain, while compactness improves precision by reducing redundancy and noise. To demonstrate the effectiveness of our approach, we present a case study conducted at a well-renowned university, resulting in the creation of PolyBench, a large-scale, high-quality academic benchmark. Although this study focuses on academia, the Comp-Comp framework is domain-agnostic and readily adaptable to a wide range of specialized fields. The source code and datasets can be accessed at https://github.com/Anya-RB-Chen/COMP-COMP.

Recursive State Inference for Linear PASFA

arXiv:2509.07028v1 Announce Type: new Abstract: Slow feature analysis (SFA), as a method for learning slowly varying features in classification and signal analysis, has attracted increasing attention in recent years. Recent probabilistic extensions to SFA learn effective representations for classification tasks. Notably, the Probabilistic Adaptive Slow Feature Analysis models the slow features as states in an ARMA process and estimate the model from the observations. However, there is a need to develop efficient methods to infer the states (slow features) from the observations and the model. In this paper, a recursive extension to the linear PASFA has been proposed. The proposed algorithm performs MMSE estimation of states evolving according to an ARMA process, given the observations and the model. Although current methods tackle this problem using Kalman filters after transforming the ARMA process into a state space model, the original states (or slow features) that form useful representations cannot be easily recovered. The proposed technique is evaluated on a synthetic dataset to demonstrate its correctness.

Analytic theory of dropout regularization

arXiv:2505.07792v2 Announce Type: replace-cross Abstract: Dropout is a regularization technique widely used in training artificial neural networks to mitigate overfitting. It consists of dynamically deactivating subsets of the network during training to promote more robust representations. Despite its widespread adoption, dropout probabilities are often selected heuristically, and theoretical explanations of its success remain sparse. Here, we analytically study dropout in two-layer neural networks trained with online stochastic gradient descent. In the high-dimensional limit, we derive a set of ordinary differential equations that fully characterize the evolution of the network during training and capture the effects of dropout. We obtain a number of exact results describing the generalization error and the optimal dropout probability at short, intermediate, and long training times. Our analysis shows that dropout reduces detrimental correlations between hidden nodes, mitigates the impact of label noise, and that the optimal dropout probability increases with the level of noise in the data. Our results are validated by extensive numerical simulations.

1 bit is all we need: binary normalized neural networks

arXiv:2509.07025v1 Announce Type: new Abstract: The increasing size of large neural network models, specifically language models and foundational image models, poses deployment challenges, prompting efforts to reduce memory requirements and enhance computational efficiency. These efforts are critical to ensure practical deployment and effective utilization of these models across various applications. In this work, a novel type of neural network layers and models is developed that uses only single-bit parameters. In this novel type of models all parameters of all layers, including kernel weights and biases, only have values equal to zero or one. This novel type of models uses layers named as binary normalized layer. These binary normalized layers can be of any type, such as fully connected, convolutional, attention, etc., and they consist of slight variations of the corresponding conventional layers. To show the effectiveness of the binary normalized layers, two different models are configured to solve a multiclass image classification problem and a language decoder to predict the next token of a sequence. The model to solve the image classification has convolutional and fully connected layers, and the language model is composed of transformer blocks with multi-head attention. The results show that models with binary normalized layers present almost the same results obtained by equivalent models with real 32-bit parameters. The binary normalized layers allow to develop models that use 32 times less memory than current models and have equivalent performance. Besides, the binary normalized layers can be easily implemented on current computers using 1-bit arrays, and do not require the development of dedicated electronic hardware. This novel type of layers opens a new era for large neural network models with reduced memory requirements that can be deployed using simple and cheap hardware, such as mobile devices or only cpus.

Explainable Metrics for the Assessment of Neurodegenerative Diseases through Handwriting Analysis

arXiv:2409.08303v3 Announce Type: replace-cross Abstract: Motor dysfunction is a common sign of neurodegenerative diseases (NDs) such as Parkinson's disease (PD) and Alzheimer's disease (AD), but may be difficult to detect, especially in the early stages. In this work, we examine the behavior of a wide array of explainable metrics extracted from the handwriting signals of 113 subjects performing multiple tasks on a digital tablet, as part of the Neurological Signals dataset. The aim is to measure their effectiveness in characterizing NDs, including AD and PD. To this end, task-agnostic and task-specific metrics are extracted from 14 distinct tasks. Subsequently, through statistical analysis and a series of classification experiments, we investigate which metrics provide greater discriminative power between NDs and healthy controls and amongst different NDs. Preliminary results indicate that the tasks at hand can all be effectively leveraged to distinguish between the considered set of NDs, specifically by measuring the stability, the speed of writing, the time spent not writing, and the pressure variations between groups from our handcrafted explainable metrics, which shows p-values lower than 0.0001 for multiple tasks. Using various binary classification algorithms on the computed metrics, we obtain up to 87 % accuracy for the discrimination between AD and healthy controls (CTL), and up to 69 % for the discrimination between PD and CTL.

An efficient deep reinforcement learning environment for flexible job-shop scheduling

arXiv:2509.07019v1 Announce Type: new Abstract: The Flexible Job-shop Scheduling Problem (FJSP) is a classical combinatorial optimization problem that has a wide-range of applications in the real world. In order to generate fast and accurate scheduling solutions for FJSP, various deep reinforcement learning (DRL) scheduling methods have been developed. However, these methods are mainly focused on the design of DRL scheduling Agent, overlooking the modeling of DRL environment. This paper presents a simple chronological DRL environment for FJSP based on discrete event simulation and an end-to-end DRL scheduling model is proposed based on the proximal policy optimization (PPO). Furthermore, a short novel state representation of FJSP is proposed based on two state variables in the scheduling environment and a novel comprehensible reward function is designed based on the scheduling area of machines. Experimental results on public benchmark instances show that the performance of simple priority dispatching rules (PDR) is improved in our scheduling environment and our DRL scheduling model obtains competing performance compared with OR-Tools, meta-heuristic, DRL and PDR scheduling methods.

FNODE: Flow-Matching for data-driven simulation of constrained multibody systems

arXiv:2509.00183v2 Announce Type: replace Abstract: Data-driven modeling of constrained multibody systems faces two persistent challenges: high computational cost and limited long-term prediction accuracy. To address these issues, we introduce the Flow-Matching Neural Ordinary Differential Equation (FNODE), a framework that learns acceleration vector fields directly from trajectory data. By reformulating the training objective to supervise accelerations rather than integrated states, FNODE eliminates the need for backpropagation through an ODE solver, which represents a bottleneck in traditional Neural ODEs. Acceleration targets are computed efficiently using numerical differentiation techniques, including a hybrid Fast Fourier Transform (FFT) and Finite Difference (FD) scheme. We evaluate FNODE on a diverse set of benchmarks, including the single and triple mass-spring-damper systems, double pendulum, slider-crank, and cart-pole. Across all cases, FNODE consistently outperforms existing approaches such as Multi-Body Dynamic Neural ODE (MBD-NODE), Long Short-Term Memory (LSTM) networks, and Fully Connected Neural Networks (FCNN), demonstrating good accuracy, generalization, and computational efficiency.

Machine Generalize Learning in Agent-Based Models: Going Beyond Surrogate Models for Calibration in ABMs

arXiv:2509.07013v1 Announce Type: new Abstract: Calibrating agent-based epidemic models is computationally demanding. We present a supervised machine learning calibrator that learns the inverse mapping from epidemic time series to SIR parameters. A three-layer bidirectional LSTM ingests 60-day incidence together with population size and recovery rate, and outputs transmission probability, contact rate, and R0. Training uses a composite loss with an epidemiology-motivated consistency penalty that encourages R0 * recovery rate to equal transmission probability * contact rate. In a 1000-scenario simulation study, we compare the calibrator with Approximate Bayesian Computation (likelihood-free MCMC). The method achieves lower error across all targets (MAE: R0 0.0616 vs 0.275; transmission 0.0715 vs 0.128; contact 1.02 vs 4.24), produces tighter predictive intervals with near nominal coverage, and reduces wall clock time from 77.4 s to 2.35 s per calibration. Although contact rate and transmission probability are partially nonidentifiable, the approach reproduces epidemic curves more faithfully than ABC, enabling fast and practical calibration. We evaluate it on SIR agent based epidemics generated with epiworldR and provide an implementation in R.

When Do Neural Networks Learn World Models?

arXiv:2502.09297v5 Announce Type: replace Abstract: Humans develop world models that capture the underlying generation process of data. Whether neural networks can learn similar world models remains an open problem. In this work, we present the first theoretical results for this problem, showing that in a multi-task setting, models with a low-degree bias provably recover latent data-generating variables under mild assumptions--even if proxy tasks involve complex, non-linear functions of the latents. However, such recovery is sensitive to model architecture. Our analysis leverages Boolean models of task solutions via the Fourier-Walsh transform and introduces new techniques for analyzing invertible Boolean transforms, which may be of independent interest. We illustrate the algorithmic implications of our results and connect them to related research areas, including self-supervised learning, out-of-distribution generalization, and the linear representation hypothesis in large language models.

FediLoRA: Heterogeneous LoRA for Federated Multimodal Fine-tuning under Missing Modalities

arXiv:2509.06984v1 Announce Type: new Abstract: Foundation models have demonstrated remarkable performance across a wide range of tasks, yet their large parameter sizes pose challenges for practical deployment, especially in decentralized environments. Parameter-efficient fine-tuning (PEFT), such as Low-Rank Adaptation (LoRA), reduces local computing and memory overhead, making it attractive for federated learning. However, existing federated LoRA methods typically assume uniform rank configurations and unimodal inputs, overlooking two key real-world challenges: (1) heterogeneous client resources have different LoRA ranks, and (2) multimodal data settings with potentially missing modalities. In this work, we propose FediLoRA, a simple yet effective framework for federated multimodal fine-tuning under heterogeneous LoRA ranks and missing modalities. FediLoRA introduces a dimension-wise aggregation strategy that reweights LoRA updates without information dilution during aggregation. It also includes a lightweight layer-wise model editing method that selectively incorporates global parameters to repair local components which improves both client and global model performances. Experimental results on three multimodal benchmark datasets demonstrate that FediLoRA achieves superior performance over competitive baselines in both global and personalized settings, particularly in the presence of modality incompleteness.