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A Comprehensive Benchmark for RNA 3D Structure-Function Modeling

arXiv:2503.21681v3 Announce Type: replace-cross Abstract: The relationship between RNA structure and function has recently attracted interest within the deep learning community, a trend expected to intensify as nucleic acid structure models advance. Despite this momentum, the lack of standardized, accessible…

LICO: Large Language Models for In-Context Molecular Optimization

arXiv:2406.18851v2 Announce Type: replace Abstract: Optimizing black-box functions is a fundamental problem in science and engineering. To solve this problem, many approaches learn a surrogate function that estimates the underlying objective from limited historical evaluations. Large Language Models (LLMs), with…

Prior-informed optimization of treatment recommendation via bandit algorithms trained on large language model-processed historical records

arXiv:2510.19014v1 Announce Type: new Abstract: Current medical practice depends on standardized treatment frameworks and empirical methodologies that neglect individual patient variations, leading to suboptimal health outcomes. We develop a comprehensive system integrating Large Language Models (LLMs), Conditional Tabular Generative Adversarial…

Empowering Decision Trees via Shape Function Branching

arXiv:2510.19040v1 Announce Type: new Abstract: Decision trees are prized for their interpretability and strong performance on tabular data. Yet, their reliance on simple axis-aligned linear splits often forces deep, complex structures to capture non-linear feature effects, undermining human comprehension of…