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Toward a universal foundation model for graph-structured data

arXiv:2604.06391v1 Announce Type: new Abstract: Graphs are a central representation in biomedical research, capturing molecular interaction networks, gene regulatory circuits, cell–cell communication maps, and knowledge graphs. Despite their importance, currently there is not a broadly reusable foundation model available for…

EvoFlows: Evolutionary Edit-Based Flow-Matching for Protein Engineering

arXiv:2603.11703v2 Announce Type: replace Abstract: We introduce EvoFlows, a variable-length protein sequence-to-sequence modeling approach designed for protein engineering. Existing protein language models are poorly suited for optimization tasks: autoregressive models require full sequence generation, masked language and discrete diffusion models…

Inference-Time Scaling of Diffusion Language Models via Trajectory Refinement

arXiv:2507.08390v4 Announce Type: replace Abstract: Discrete diffusion models have recently emerged as strong alternatives to autoregressive language models, matching their performance through large-scale training. However, inference-time control remains relatively underexplored. In this work, we study how to steer generation toward…

Tensor-Efficient High-Dimensional Q-learning

arXiv:2511.03595v2 Announce Type: replace Abstract: High-dimensional reinforcement learning(RL) faces challenges with complex calculations and low sample efficiency in large state-action spaces. Q-learning algorithms struggle particularly with the curse of dimensionality, where the number of state-action pairs grows exponentially with problem…